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Perfect phylogeny
Example: characters = genes; 0 = absent; 1 = present
Taxa: genomes (A,B,C,D,E)
genes
B 1 1 0 0 0 0
C 0 0 0 1 1 1
D 1 0 1 0 0 0
E 0 0 0 1 0 0
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Perfect phylogeny tree
Goal: For a given character state matrix construct a tree topology that provides perfect phylogeny.
